| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Albert Pujols StL |
| 2 | 23rd | 3B Scott Rolen StL |
| 3 | 26th | SP Pedro Martinez Bos |
| 4 | 47th | C Ivan Rodriguez Det |
| 5 | 50th | SP Josh Beckett Fla |
| 6 | 71st | SS Orlando Cabrera Bos |
| 7 | 74th | SP Kevin Brown NYA |
| 8 | 95th | 1B Mark Teixeira Tex |
| 9 | 98th | SP Greg Maddux ChN |
| 10 | 119th | SS Mike Young Tex |
| 11 | 122nd | SP Jose Contreras ChA |
| 12 | 143rd | RP Jorge Julio Bal |
| 13 | 146th | SP Shawn Chacon Col |
| 14 | 167th | OF Brad Wilkerson Mon |
| 15 | 170th | OF Raul Ibanez Sea |
| 16 | 191st | OF Carl Crawford TB |
| 17 | 194th | RP Braden Looper NYN |
| 18 | 215th | SP Brett Myers Phi |
| 19 | 218th | OF Jermaine Dye Oak |
| 20 | 239th | 1B John Olerud NYA |
| 21 | 242nd | OF Marlon Byrd Phi |
| 22 | 263rd | OF Scott Podsednik Mil |
| 23 | 266th | SP Cliff Lee Cle |
| 24 | 287th | SS David Eckstein Ana |
| 25 | 290th | 2B Mark DeRosa Atl |
| 26 | 311th | SP Jeremy Bonderman Det |
| 27 | 314th | 3B Sean Burroughs SD |
| 28 | 335th | RP Curt Leskanic Bos |
| 29 | 338th | C Miguel Olivo Sea |