| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Todd Helton Col |
| 2 | 20th | OF Garret Anderson Ana |
| 3 | 29th | OF Brian S. Giles SD |
| 4 | 44th | SS Derek Jeter NYA |
| 5 | 53rd | OF Preston Wilson Col |
| 6 | 68th | 3B Aramis Ramirez ChN |
| 7 | 77th | 2B Jose Vidro Mon |
| 8 | 92nd | SP Andy Pettitte Hou |
| 9 | 101st | SP Hideo Nomo LA |
| 10 | 116th | SP Tom Glavine NYN |
| 11 | 125th | C Mike Lieberthal Phi |
| 12 | 140th | RP Trevor Hoffman SD |
| 13 | 149th | OF Shannon Stewart Min |
| 14 | 164th | SP Brad Penny LA |
| 15 | 173rd | OF Moises Alou ChN |
| 16 | 188th | 3B Joe Randa KC |
| 17 | 197th | SP Eric Milton Phi |
| 18 | 212th | SP Miguel Batista Tor |
| 19 | 221st | OF Kenny Lofton NYA |
| 20 | 236th | OF Darin Erstad Ana |
| 21 | 245th | 1B Doug Mientkiewicz Bos |
| 22 | 260th | SP Jason Johnson Det |
| 23 | 269th | SS Carlos Guillen Det |
| 24 | 284th | OF Jerry Hairston Jr. Bal |
| 25 | 293rd | SP Shawn Estes Col |
| 26 | 308th | RP Justin Speier Tor |
| 27 | 317th | SP Kenny Rogers Tex |
| 28 | 332nd | C Kevin Cash Tor |
| 29 | 341st | SP Mike Maroth Det |