| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Vladimir Guerrero Ana |
| 2 | 16th | OF Sammy Sosa ChN |
| 3 | 33rd | SP Mike Mussina NYA |
| 4 | 40th | 1B Jeff Bagwell Hou |
| 5 | 57th | SP Roy Oswalt Hou |
| 6 | 64th | SS Rafael Furcal Atl |
| 7 | 81st | SP Brandon Webb Ari |
| 8 | 88th | 3B Morgan Ensberg Hou |
| 9 | 105th | OF Ichiro Suzuki Sea |
| 10 | 112th | SP Joel Pineiro Sea |
| 11 | 129th | OF Milton Bradley LA |
| 12 | 136th | OF Adam Dunn Cin |
| 13 | 153rd | SP Matt Clement ChN |
| 14 | 160th | 2B Roberto Alomar ChA |
| 15 | 177th | SP Jeremy Affeldt KC |
| 16 | 184th | C Matthew LeCroy Min |
| 17 | 201st | 3B Vinny Castilla Col |
| 18 | 208th | C Charles Johnson Col |
| 19 | 225th | SP Jason Davis Cle |
| 20 | 232nd | 1B Josh Phelps Cle |
| 21 | 249th | SP Victor Zambrano NYN |
| 22 | 256th | SP Byung-Hyun Kim Bos |
| 23 | 273rd | OF Jody Gerut Cle |
| 24 | 280th | 3B Alex Gonzalez TB |
| 25 | 297th | RP David Riske Cle |
| 26 | 304th | 2B Orlando Hudson Tor |
| 27 | 321st | OF Craig A. Wilson Pit |
| 28 | 328th | OF Larry Bigbie Bal |
| 29 | 345th | RP Francisco Rodriguez Ana |