| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SS Miguel Tejada Bal |
| 2 | 15th | OF Gary Sheffield NYA |
| 3 | 34th | 2B Bret Boone Sea |
| 4 | 39th | OF Bobby Abreu Phi |
| 5 | 58th | SP Josh Beckett Fla |
| 6 | 63rd | OF Preston Wilson Col |
| 7 | 82nd | 1B Mark Teixeira Tex |
| 8 | 87th | OF Jim Edmonds StL |
| 9 | 106th | RP Arthur Rhodes Oak |
| 10 | 111th | OF Miguel Cabrera Fla |
| 11 | 130th | SP Wade Miller Hou |
| 12 | 135th | C Joe Mauer Min |
| 13 | 154th | 3B Bill Mueller Bos |
| 14 | 159th | SP Dontrelle Willis Fla |
| 15 | 178th | SP Mark Redman Oak |
| 16 | 183rd | 1B Kevin Millar Bos |
| 17 | 202nd | 1B Paul Konerko ChA |
| 18 | 207th | SS Bobby Crosby Oak |
| 19 | 226th | SP Tom Glavine NYN |
| 20 | 231st | 3B Joe Crede ChA |
| 21 | 250th | SP A.J. Burnett Fla |
| 22 | 255th | SP Byung-Hyun Kim Bos |
| 23 | 274th | SP Steve Trachsel NYN |
| 24 | 279th | C Ramon Castro Fla |
| 25 | 298th | C Greg Myers Tor |
| 26 | 303rd | 1B Justin Morneau Min |
| 27 | 322nd | SS Alex Gonzalez Fla |
| 28 | 327th | OF Jerry Hairston Jr. Bal |
| 29 | 346th | SP Brandon Claussen Cin |