| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Albert Pujols StL |
| 2 | 23rd | RP Eric Gagne LA |
| 3 | 26th | 3B Mike Lowell Fla |
| 4 | 47th | SP Mark Mulder Oak |
| 5 | 50th | OF Shawn Green LA |
| 6 | 71st | SP Bartolo Colon Ana |
| 7 | 74th | 2B Luis Castillo Fla |
| 8 | 95th | SP Derek Lowe Bos |
| 9 | 98th | C Jason Varitek Bos |
| 10 | 119th | 1B Phil Nevin SD |
| 11 | 122nd | OF Juan Gonzalez KC |
| 12 | 143rd | RP David Riske Cle |
| 13 | 146th | OF Reggie Sanders StL |
| 14 | 167th | SS Julio Lugo TB |
| 15 | 170th | SP Edwin Jackson LA |
| 16 | 191st | C Ramon Hernandez SD |
| 17 | 194th | SP Carl Pavano Fla |
| 18 | 215th | SP Tim Redding Hou |
| 19 | 218th | SP Kyle Lohse Min |
| 20 | 239th | 3B Jose Valentin ChA |
| 21 | 242nd | 2B Mark DeRosa Atl |
| 22 | 263rd | OF Mike Cameron NYN |
| 23 | 266th | SP Kazuhisa Ishii LA |
| 24 | 287th | 3B Eric Munson Det |
| 25 | 290th | 1B Adam LaRoche Atl |
| 26 | 311th | OF Luis Matos Bal |
| 27 | 314th | SP Shawn Estes Col |
| 28 | 335th | OF Aaron Rowand ChA |
| 29 | 338th | SP Ryan Wagner Cin |