| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Jim Thome Phi |
| 2 | 17th | 3B Eric Chavez Oak |
| 3 | 32nd | SP Barry Zito Oak |
| 4 | 41st | SP Javier Vazquez NYA |
| 5 | 56th | 2B Kazuo Matsui NYN |
| 6 | 65th | OF Andruw Jones Atl |
| 7 | 80th | OF J.D. Drew Atl |
| 8 | 89th | SP Esteban Loaiza NYA |
| 9 | 104th | OF Pat Burrell Phi |
| 10 | 113th | SP Greg Maddux ChN |
| 11 | 128th | SP Russ Ortiz Atl |
| 12 | 137th | RP Braden Looper NYN |
| 13 | 152nd | RP Robb Nen SF |
| 14 | 161st | RP Jorge Julio Bal |
| 15 | 176th | RP Damaso Marte ChA |
| 16 | 185th | OF Raul Ibanez Sea |
| 17 | 200th | C Victor Martinez Cle |
| 18 | 209th | 2B Todd Walker ChN |
| 19 | 224th | OF Juan Encarnacion Fla |
| 20 | 233rd | 1B Jason Phillips NYN |
| 21 | 248th | 1B Erubiel Durazo Oak |
| 22 | 257th | SP Ryan Franklin Sea |
| 23 | 272nd | SS Khalil Greene SD |
| 24 | 281st | C Toby Hall TB |
| 25 | 296th | 3B Ty Wigginton Pit |
| 26 | 305th | SP Victor Zambrano NYN |
| 27 | 320th | SP Brett Tomko SF |
| 28 | 329th | SP Paul Wilson Cin |
| 29 | 344th | 2B Matt Kata Ari |