| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 2B Alfonso Soriano Tex |
| 2 | 22nd | 1B Jason Giambi NYA |
| 3 | 27th | SP Pedro Martinez Bos |
| 4 | 46th | RP Octavio Dotel Oak |
| 5 | 51st | SP Tim Hudson Oak |
| 6 | 70th | SS Rafael Furcal Atl |
| 7 | 75th | 1B Eric Hinske Tor |
| 8 | 94th | 1B David Ortiz Bos |
| 9 | 99th | C Matthew LeCroy Min |
| 10 | 118th | OF Bernie Williams NYA |
| 11 | 123rd | RP Matt Mantei Ari |
| 12 | 142nd | SP Mike Hampton Atl |
| 13 | 147th | OF Johnny Damon Bos |
| 14 | 166th | SP Eric Milton Phi |
| 15 | 171st | OF Milton Bradley LA |
| 16 | 190th | OF Marlon Byrd Phi |
| 17 | 195th | C Charles Johnson Col |
| 18 | 214th | SP John Lackey Ana |
| 19 | 219th | 1B Travis Hafner Cle |
| 20 | 238th | 3B Edgardo Alfonzo SF |
| 21 | 243rd | SP Jason Johnson Det |
| 22 | 262nd | SS Royce Clayton Col |
| 23 | 267th | OF Jacque Jones Min |
| 24 | 286th | RP Billy Koch Fla |
| 25 | 291st | 2B Orlando Hudson Tor |
| 26 | 310th | SP Darrell May KC |
| 27 | 315th | SP Jason Marquis StL |
| 28 | 334th | SP Eric DuBose Bal |
| 29 | 339th | SP Rocky Biddle Mon |