| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Nomar Garciaparra ChN |
| 2 | 19th | 3B Hank Blalock Tex |
| 3 | 30th | OF Vernon Wells Tor |
| 4 | 43rd | 1B Derrek Lee ChN |
| 5 | 54th | 2B Marcus Giles Atl |
| 6 | 67th | RP Eddie Guardado Sea |
| 7 | 78th | SP Brandon Webb Ari |
| 8 | 91st | RP Armando Benitez Fla |
| 9 | 102nd | OF Geoff Jenkins Mil |
| 10 | 115th | OF Austin Kearns Cin |
| 11 | 126th | 1B Nick Johnson Mon |
| 12 | 139th | C Mike Lieberthal Phi |
| 13 | 150th | 3B Aramis Ramirez ChN |
| 14 | 163rd | OF Jose Guillen Ana |
| 15 | 174th | SS Mike Young Tex |
| 16 | 187th | RP Francisco Cordero Tex |
| 17 | 198th | SP Adam Eaton SD |
| 18 | 211th | SP Kip Wells Pit |
| 19 | 222nd | SP Kris Benson NYN |
| 20 | 235th | SP Chris Carpenter StL |
| 21 | 246th | OF Brad Wilkerson Mon |
| 22 | 259th | 1B Josh Phelps Cle |
| 23 | 270th | SP Cliff Lee Cle |
| 24 | 283rd | SP Jeff Suppan StL |
| 25 | 294th | C Michael Barrett ChN |
| 26 | 307th | SP Zach Day Mon |
| 27 | 318th | OF Steve Finley LA |
| 28 | 331st | SS Jack Wilson Pit |
| 29 | 342nd | OF Larry Bigbie Bal |