| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Sammy Sosa ChN |
| 2 | 16th | 3B Scott Rolen StL |
| 3 | 33rd | SP Kerry Wood ChN |
| 4 | 40th | RP Mariano Rivera NYA |
| 5 | 57th | SP Kevin Brown NYA |
| 6 | 64th | C Ivan Rodriguez Det |
| 7 | 81st | SP Andy Pettitte Hou |
| 8 | 88th | SP Roger Clemens Hou |
| 9 | 105th | SS Jimmy Rollins Phi |
| 10 | 112th | 2B Ray Durham SF |
| 11 | 129th | OF Shannon Stewart Min |
| 12 | 136th | SP Hideo Nomo LA |
| 13 | 153rd | DH Edgar Martinez Sea |
| 14 | 160th | OF Trot Nixon Bos |
| 15 | 177th | SP Ben Sheets Mil |
| 16 | 184th | OF Jeromy Burnitz Col |
| 17 | 201st | OF Moises Alou ChN |
| 18 | 208th | RP Ugueth Urbina Det |
| 19 | 225th | SP Ramon Ortiz Ana |
| 20 | 232nd | 1B Sean Casey Cin |
| 21 | 249th | OF Kenny Lofton NYA |
| 22 | 256th | 1B John Olerud NYA |
| 23 | 273rd | OF Jody Gerut Cle |
| 24 | 280th | SS Pokey Reese Bos |
| 25 | 297th | OF Tim Salmon Ana |
| 26 | 304th | SP Jon Lieber NYA |
| 27 | 321st | 3B Alex Gonzalez TB |
| 28 | 328th | 3B Wes Helms Mil |
| 29 | 345th | RP LaTroy Hawkins ChN |