| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Manny Ramirez Bos |
| 2 | 13th | C Jorge Posada NYA |
| 3 | 36th | OF Lance Berkman Hou |
| 4 | 37th | 2B Jeff Kent Hou |
| 5 | 60th | 3B Chipper Jones Atl |
| 6 | 61st | OF Garret Anderson Ana |
| 7 | 84th | 1B Rafael Palmeiro Bal |
| 8 | 85th | 3B Melvin Mora Bal |
| 9 | 108th | SP Mark Buehrle ChA |
| 10 | 109th | SP Carlos Zambrano ChN |
| 11 | 132nd | SS Rich Aurilia SD |
| 12 | 133rd | SP Odalis Perez LA |
| 13 | 156th | OF Torii Hunter Min |
| 14 | 157th | SP Sidney Ponson Bal |
| 15 | 180th | SP Woody Williams StL |
| 16 | 181st | SP Horacio Ramirez Atl |
| 17 | 204th | SP Al Leiter NYN |
| 18 | 205th | SP Rich Harden Oak |
| 19 | 228th | SP Gil Meche Sea |
| 20 | 229th | SP Jeff Weaver LA |
| 21 | 252nd | 2B Junior Spivey Mil |
| 22 | 253rd | SP Tomo Ohka Mon |
| 23 | 276th | SP Paul Byrd Atl |
| 24 | 277th | 3B Tony Batista Mon |
| 25 | 300th | SS Omar Vizquel Cle |
| 26 | 301st | C Miguel Olivo Sea |
| 27 | 324th | DH Ellis Burks Bos |
| 28 | 325th | OF Randy Winn Sea |
| 29 | 348th | 1B Doug Mientkiewicz Bos |