| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Manny Ramirez Bos |
| 2 | 15th | SP Curt Schilling Bos |
| 3 | 34th | SS Derek Jeter NYA |
| 4 | 39th | SP Mike Mussina NYA |
| 5 | 58th | 3B Hank Blalock Tex |
| 6 | 63rd | C Ivan Rodriguez Det |
| 7 | 82nd | 2B Jose Vidro Mon |
| 8 | 87th | 1B Rafael Palmeiro Bal |
| 9 | 106th | OF Austin Kearns Cin |
| 10 | 111th | SP Joel Pineiro Sea |
| 11 | 130th | SP Odalis Perez LA |
| 12 | 135th | OF Carl Everett ChA |
| 13 | 154th | 1B Josh Phelps Cle |
| 14 | 159th | OF Johnny Damon Bos |
| 15 | 178th | SP David Wells SD |
| 16 | 183rd | OF Brad Wilkerson Mon |
| 17 | 202nd | SP Miguel Batista Tor |
| 18 | 207th | RP Matt Herges SF |
| 19 | 226th | RP David Riske Cle |
| 20 | 231st | C Johnny Estrada Atl |
| 21 | 250th | SP Tim Wakefield Bos |
| 22 | 255th | 3B Edgardo Alfonzo SF |
| 23 | 274th | 1B Ben Broussard Cle |
| 24 | 279th | RP Danny Graves Cin |
| 25 | 298th | 1B Travis Hafner Cle |
| 26 | 303rd | 2B Brian Roberts Bal |
| 27 | 322nd | SP Zach Day Mon |
| 28 | 327th | SS Pokey Reese Bos |
| 29 | 346th | OF Michael Cuddyer Min |