| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Albert Pujols StL |
| 2 | 23rd | SP Roy Halladay Tor |
| 3 | 26th | SP Javier Vazquez NYA |
| 4 | 47th | 1B Jeff Bagwell Hou |
| 5 | 50th | SP Bartolo Colon Ana |
| 6 | 71st | SP Sidney Ponson Bal |
| 7 | 74th | OF Ichiro Suzuki Sea |
| 8 | 95th | SS Angel Berroa KC |
| 9 | 98th | OF Adam Dunn Cin |
| 10 | 119th | 2B Luis Castillo Fla |
| 11 | 122nd | 3B Corey Koskie Min |
| 12 | 143rd | C Paul Lo Duca Fla |
| 13 | 146th | 1B Jay Gibbons Bal |
| 14 | 167th | SS Bobby Crosby Oak |
| 15 | 170th | SP Eric Milton Phi |
| 16 | 191st | SP Jerome Williams SF |
| 17 | 194th | OF Juan Pierre Fla |
| 18 | 215th | SP Rafael Soriano Sea |
| 19 | 218th | C Victor Martinez Cle |
| 20 | 239th | SP Brian Anderson KC |
| 21 | 242nd | SP Jeff Weaver LA |
| 22 | 263rd | 1B Jeff Conine Fla |
| 23 | 266th | OF Marlon Byrd Phi |
| 24 | 287th | OF Juan Encarnacion Fla |
| 25 | 290th | SP Kurt Ainsworth Bal |
| 26 | 311th | 2B Willie Harris ChA |
| 27 | 314th | OF Jason Bay Pit |
| 28 | 335th | SP Kris Benson NYN |
| 29 | 338th | 3B Wes Helms Mil |