| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Jason Giambi NYA |
| 2 | 14th | OF Sammy Sosa ChN |
| 3 | 35th | 3B Chipper Jones Atl |
| 4 | 38th | SP Barry Zito Oak |
| 5 | 59th | 3B Troy Glaus Ana |
| 6 | 62nd | OF Preston Wilson Col |
| 7 | 83rd | RP Armando Benitez Fla |
| 8 | 86th | SP Brandon Webb Ari |
| 9 | 107th | 3B Aramis Ramirez ChN |
| 10 | 110th | SP Wade Miller Hou |
| 11 | 131st | SP Hideo Nomo LA |
| 12 | 134th | 2B Roberto Alomar ChA |
| 13 | 155th | OF Ryan Klesko SD |
| 14 | 158th | C Matthew LeCroy Min |
| 15 | 179th | SS Rich Aurilia SD |
| 16 | 182nd | SP Carl Pavano Fla |
| 17 | 203rd | OF Dmitri Young Det |
| 18 | 206th | SP Shawn Chacon Col |
| 19 | 227th | 1B Sean Casey Cin |
| 20 | 230th | SP John Lackey Ana |
| 21 | 251st | 3B Tony Batista Mon |
| 22 | 254th | SP Kirk Rueter SF |
| 23 | 275th | RP Jose Mesa Pit |
| 24 | 278th | C Jason LaRue Cin |
| 25 | 299th | 3B Alex Gonzalez TB |
| 26 | 302nd | SP Claudio Vargas Mon |
| 27 | 323rd | 2B Frank Menechino Tor |
| 28 | 326th | OF Steve Finley LA |
| 29 | 347th | SP Pat Hentgen Tor |