| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Barry Bonds SF |
| 2 | 22nd | C Jorge Posada NYA |
| 3 | 27th | OF Lance Berkman Hou |
| 4 | 46th | 2B Jeff Kent Hou |
| 5 | 51st | RP Octavio Dotel Oak |
| 6 | 70th | OF Jim Edmonds StL |
| 7 | 75th | 1B Mike Sweeney KC |
| 8 | 94th | RP Jason Isringhausen StL |
| 9 | 99th | SP Greg Maddux ChN |
| 10 | 118th | OF Juan Gonzalez KC |
| 11 | 123rd | SP Vicente Padilla Phi |
| 12 | 142nd | SP Livan Hernandez Mon |
| 13 | 147th | SP C.C. Sabathia Cle |
| 14 | 166th | 3B Jose Valentin ChA |
| 15 | 171st | 3B Bill Mueller Bos |
| 16 | 190th | SP Mike Hampton Atl |
| 17 | 195th | 3B Melvin Mora Bal |
| 18 | 214th | SP Tom Glavine NYN |
| 19 | 219th | 1B Erubiel Durazo Oak |
| 20 | 238th | 2B Junior Spivey Mil |
| 21 | 243rd | OF Jermaine Dye Oak |
| 22 | 262nd | OF Trot Nixon Bos |
| 23 | 267th | SP Tomo Ohka Mon |
| 24 | 286th | RP Billy Koch Fla |
| 25 | 291st | RP Damaso Marte ChA |
| 26 | 310th | SP Jon Lieber NYA |
| 27 | 315th | SS Omar Vizquel Cle |
| 28 | 334th | OF Matt Lawton Cle |
| 29 | 339th | C Chad Moeller Mil |