| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 1B Todd Helton Col |
| 2 | 19th | RP Eric Gagne LA |
| 3 | 30th | 3B Scott Rolen StL |
| 4 | 43rd | RP Keith Foulke Bos |
| 5 | 54th | SS Edgar Renteria StL |
| 6 | 67th | SP Matt Morris StL |
| 7 | 78th | SP Johan Santana Min |
| 8 | 91st | 1B David Ortiz Bos |
| 9 | 102nd | SP Esteban Loaiza NYA |
| 10 | 115th | OF Jeromy Burnitz Col |
| 11 | 126th | SP Woody Williams StL |
| 12 | 139th | C A.J. Pierzynski SF |
| 13 | 150th | OF Raul Ibanez Sea |
| 14 | 163rd | OF J.D. Drew Atl |
| 15 | 174th | OF Corey Patterson ChN |
| 16 | 187th | OF Reggie Sanders StL |
| 17 | 198th | DH Edgar Martinez Sea |
| 18 | 211th | 3B Vinny Castilla Col |
| 19 | 222nd | 2B Mark Loretta SD |
| 20 | 235th | SP Jeff Suppan StL |
| 21 | 246th | C Benito Santiago KC |
| 22 | 259th | 2B Mark DeRosa Atl |
| 23 | 270th | OF Jay Payton SD |
| 24 | 283rd | 1B Doug Mientkiewicz Bos |
| 25 | 294th | SP Brett Tomko SF |
| 26 | 307th | OF Moises Alou ChN |
| 27 | 318th | SP Jose Valverde Ari |
| 28 | 331st | RP LaTroy Hawkins ChN |
| 29 | 342nd | SP Kenny Rogers Tex |