| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Pedro Martinez Bos |
| 2 | 16th | OF Brian S. Giles SD |
| 3 | 33rd | RP Billy Wagner Phi |
| 4 | 40th | SP Josh Beckett Fla |
| 5 | 57th | RP Arthur Rhodes Oak |
| 6 | 64th | 2B Marcus Giles Atl |
| 7 | 81st | SP Randy Wolf Phi |
| 8 | 88th | 1B Eric Hinske Tor |
| 9 | 105th | SP Jose Contreras ChA |
| 10 | 112th | SS Jimmy Rollins Phi |
| 11 | 129th | C Jason Kendall Pit |
| 12 | 136th | SP Matt Clement ChN |
| 13 | 153rd | 1B Brad Fullmer Tex |
| 14 | 160th | RP Dan Kolb Mil |
| 15 | 177th | SP John Thomson Atl |
| 16 | 184th | C Ramon Hernandez SD |
| 17 | 201st | SP Ben Sheets Mil |
| 18 | 208th | OF Shannon Stewart Min |
| 19 | 225th | OF Randy Winn Sea |
| 20 | 232nd | OF Scott Podsednik Mil |
| 21 | 249th | 3B Adrian Beltre LA |
| 22 | 256th | SS Khalil Greene SD |
| 23 | 273rd | RP Danys Baez TB |
| 24 | 280th | 2B Aaron Miles Col |
| 25 | 297th | 1B Scott Spiezio Sea |
| 26 | 304th | SP Adam Eaton SD |
| 27 | 321st | 2B Fernando Vina Det |
| 28 | 328th | OF Luis Matos Bal |
| 29 | 345th | OF Laynce Nix Tex |