| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Alex Rodriguez NYA |
| 2 | 24th | 1B Jason Giambi NYA |
| 3 | 25th | SS Derek Jeter NYA |
| 4 | 48th | RP Octavio Dotel Oak |
| 5 | 49th | 3B Chipper Jones Atl |
| 6 | 72nd | RP Eddie Guardado Sea |
| 7 | 73rd | OF Adam Dunn Cin |
| 8 | 96th | OF Pat Burrell Phi |
| 9 | 97th | SP Mark Buehrle ChA |
| 10 | 120th | C Mike Lieberthal Phi |
| 11 | 121st | 1B Rafael Palmeiro Bal |
| 12 | 144th | SP Brad Radke Min |
| 13 | 145th | C Joe Mauer Min |
| 14 | 168th | SP Woody Williams StL |
| 15 | 169th | SP Mike Hampton Atl |
| 16 | 192nd | SP Jerome Williams SF |
| 17 | 193rd | SP Miguel Batista Tor |
| 18 | 216th | 2B Roberto Alomar ChA |
| 19 | 217th | OF Jeromy Burnitz Col |
| 20 | 240th | OF Jose Cruz Jr TB |
| 21 | 241st | SP Jeff Suppan StL |
| 22 | 264th | 3B Tony Batista Mon |
| 23 | 265th | SP Jon Garland ChA |
| 24 | 288th | 1B Travis Hafner Cle |
| 25 | 289th | SP Victor Zambrano NYN |
| 26 | 312th | RP Billy Koch Fla |
| 27 | 313th | SS Royce Clayton Col |
| 28 | 336th | 2B Luis Rivas Min |
| 29 | 337th | SP Elmer Dessens Ari |