| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SP Pedro Martinez Bos |
| 2 | 15th | SP Roy Halladay Tor |
| 3 | 34th | OF Preston Wilson Col |
| 4 | 39th | RP Mariano Rivera NYA |
| 5 | 58th | 2B Jose Vidro Mon |
| 6 | 63rd | C Ivan Rodriguez Det |
| 7 | 82nd | SP Bartolo Colon Ana |
| 8 | 87th | OF Ichiro Suzuki Sea |
| 9 | 106th | 3B Corey Koskie Min |
| 10 | 111th | 1B Nick Johnson Mon |
| 11 | 130th | OF Juan Pierre Fla |
| 12 | 135th | RP Trevor Hoffman SD |
| 13 | 154th | SP Matt Clement ChN |
| 14 | 159th | SS Rich Aurilia SD |
| 15 | 178th | OF Carl Crawford TB |
| 16 | 183rd | SP Tim Wakefield Bos |
| 17 | 202nd | RP Robb Nen SF |
| 18 | 207th | 3B Sean Burroughs SD |
| 19 | 226th | RP Curt Leskanic Bos |
| 20 | 231st | C Benito Santiago KC |
| 21 | 250th | 1B Doug Mientkiewicz Bos |
| 22 | 255th | 2B Orlando Hudson Tor |
| 23 | 274th | SP Ramon Ortiz Ana |
| 24 | 279th | SS David Eckstein Ana |
| 25 | 298th | SP Cory Lidle Phi |
| 26 | 303rd | RP Damaso Marte ChA |
| 27 | 322nd | OF Randy Winn Sea |
| 28 | 327th | 1B Tino Martinez TB |
| 29 | 346th | 2B Tony Womack StL |