| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 2B Alfonso Soriano Tex |
| 2 | 20th | OF Carlos Beltran Hou |
| 3 | 29th | OF Magglio Ordonez ChA |
| 4 | 44th | SP Jason Schmidt SF |
| 5 | 53rd | 3B Mike Lowell Fla |
| 6 | 68th | SP Randy Johnson Ari |
| 7 | 77th | RP Jason Isringhausen StL |
| 8 | 92nd | 1B Frank Thomas ChA |
| 9 | 101st | SP Wade Miller Hou |
| 10 | 116th | C Jason Kendall Pit |
| 11 | 125th | SP Hideo Nomo LA |
| 12 | 140th | OF Jose Guillen Ana |
| 13 | 149th | SS Jimmy Rollins Phi |
| 14 | 164th | RP Matt Mantei Ari |
| 15 | 173rd | OF Reggie Sanders StL |
| 16 | 188th | SP Brian Anderson KC |
| 17 | 197th | C A.J. Pierzynski SF |
| 18 | 212th | 1B Erubiel Durazo Oak |
| 19 | 221st | RP Danys Baez TB |
| 20 | 236th | SP Ryan Franklin Sea |
| 21 | 245th | SP Kurt Ainsworth Bal |
| 22 | 260th | OF Scott Podsednik Mil |
| 23 | 269th | 2B Brian Roberts Bal |
| 24 | 284th | SP Tomo Ohka Mon |
| 25 | 293rd | 3B Eric Munson Det |
| 26 | 308th | SS Pokey Reese Bos |
| 27 | 317th | SP Oliver Perez Pit |
| 28 | 332nd | OF Juan Encarnacion Fla |
| 29 | 341st | OF David DeJesus KC |