| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Nomar Garciaparra ChN |
| 2 | 14th | 3B Scott Rolen StL |
| 3 | 35th | 2B Marcus Giles Atl |
| 4 | 38th | RP Keith Foulke Bos |
| 5 | 59th | SP Josh Beckett Fla |
| 6 | 62nd | OF Carlos Lee ChA |
| 7 | 83rd | SP Derek Lowe Bos |
| 8 | 86th | RP Armando Benitez Fla |
| 9 | 107th | OF Richard Hidalgo NYN |
| 10 | 110th | 1B David Ortiz Bos |
| 11 | 131st | SP Odalis Perez LA |
| 12 | 134th | SP Roger Clemens Hou |
| 13 | 155th | C Matthew LeCroy Min |
| 14 | 158th | SS Alex Cintron Ari |
| 15 | 179th | 1B Kevin Millar Bos |
| 16 | 182nd | OF Trot Nixon Bos |
| 17 | 203rd | OF Brad Wilkerson Mon |
| 18 | 206th | C Ramon Castro Fla |
| 19 | 227th | OF Dmitri Young Det |
| 20 | 230th | OF Raul Ibanez Sea |
| 21 | 251st | 3B D'Angelo Jimenez Cin |
| 22 | 254th | SP John Thomson Atl |
| 23 | 275th | 2B Adam Kennedy Ana |
| 24 | 278th | OF Jason Bay Pit |
| 25 | 299th | SP Eric DuBose Bal |
| 26 | 302nd | SP Matt Riley Bal |
| 27 | 323rd | SP Jimmy Gobble KC |
| 28 | 326th | 3B Alex Gonzalez TB |
| 29 | 347th | OF Tim Salmon Ana |