| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | 3B Hank Blalock Tex |
| 3 | 27th | SP Curt Schilling Bos |
| 4 | 46th | SP John Smoltz Atl |
| 5 | 51st | SS Orlando Cabrera Bos |
| 6 | 70th | OF Garret Anderson Ana |
| 7 | 75th | SS Jose Reyes NYN |
| 8 | 94th | SP Russ Ortiz Atl |
| 9 | 99th | OF Hideki Matsui NYA |
| 10 | 118th | SP Vicente Padilla Phi |
| 11 | 123rd | SP Dontrelle Willis Fla |
| 12 | 142nd | OF Ken Griffey Jr Cin |
| 13 | 147th | C Johnny Estrada Atl |
| 14 | 166th | 3B Bill Mueller Bos |
| 15 | 171st | SP Jarrod Washburn Ana |
| 16 | 190th | SP Mark Redman Oak |
| 17 | 195th | 2B Mark Loretta SD |
| 18 | 214th | 1B Jay Gibbons Bal |
| 19 | 219th | RP Dan Kolb Mil |
| 20 | 238th | OF Darin Erstad Ana |
| 21 | 243rd | OF Moises Alou ChN |
| 22 | 262nd | 1B Sean Casey Cin |
| 23 | 267th | SS Melvin Upton TB |
| 24 | 286th | SP Rocky Biddle Mon |
| 25 | 291st | SP Aaron Harang Cin |
| 26 | 310th | SP Darrell May KC |
| 27 | 315th | 3B Desi Relaford KC |
| 28 | 334th | C Greg Myers Tor |
| 29 | 339th | SS Barry Larkin Cin |