| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Alfonso Soriano Tex |
| 2 | 21st | 3B Eric Chavez Oak |
| 3 | 28th | SP Ben Sheets Mil |
| 4 | 45th | SS Jimmy Rollins Phi |
| 5 | 52nd | SP Carlos Zambrano ChN |
| 6 | 69th | OF Andruw Jones Atl |
| 7 | 76th | OF Johnny Damon Bos |
| 8 | 93rd | OF Austin Kearns Cin |
| 9 | 100th | SP Matt Clement Bos |
| 10 | 117th | SP Brandon Webb Ari |
| 11 | 124th | 1B Rafael Palmeiro Bal |
| 12 | 141st | SP Dontrelle Willis Fla |
| 13 | 148th | 1B Ben Broussard Cle |
| 14 | 165th | SP Kelvim Escobar LAA |
| 15 | 172nd | OF Torii Hunter Min |
| 16 | 189th | SS Bobby Crosby Oak |
| 17 | 196th | 2B Aaron Boone Cle |
| 18 | 213th | SP Bronson Arroyo Bos |
| 19 | 220th | C J.D. Closser Col |
| 20 | 237th | SP Miguel Batista Tor |
| 21 | 244th | C John Buck KC |
| 22 | 261st | OF Scott Podsednik ChA |
| 23 | 268th | SP Cliff Lee Cle |
| 24 | 285th | 3B Brandon Inge Det |
| 25 | 292nd | SP Mike Adams Mil |
| 26 | 309th | 1B Jason Phillips LAD |
| 27 | 316th | SP Joe Blanton Oak |
| 28 | 333rd | OF Jeff DaVanon LAA |
| 29 | 340th | SP Wilfredo Ledezma Det |