| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Carlos Beltran NYN |
| 2 | 18th | 3B Scott Rolen StL |
| 3 | 31st | 1B Carlos Delgado Fla |
| 4 | 42nd | RP Brad Lidge Hou |
| 5 | 55th | C Javy Lopez Bal |
| 6 | 66th | 1B Lance Berkman Hou |
| 7 | 79th | RP Octavio Dotel Oak |
| 8 | 90th | SP Barry Zito Oak |
| 9 | 103rd | SP Mark Buehrle ChA |
| 10 | 114th | 1B Jason Giambi NYA |
| 11 | 127th | OF Carl Crawford TB |
| 12 | 138th | SP Odalis Perez LAD |
| 13 | 151st | RP LaTroy Hawkins SF |
| 14 | 162nd | SP Jeff Weaver LAD |
| 15 | 175th | 2B Mark Bellhorn NYA |
| 16 | 186th | OF Eric Byrnes Bal |
| 17 | 199th | SP Woody Williams SD |
| 18 | 210th | SS Khalil Greene SD |
| 19 | 223rd | C Ramon Hernandez SD |
| 20 | 234th | SP Bobby Madritsch Sea |
| 21 | 247th | SP Vicente Padilla Phi |
| 22 | 258th | OF Bernie Williams NYA |
| 23 | 271st | 2B Placido Polanco Det |
| 24 | 282nd | SS Clint Barmes Col |
| 25 | 295th | 3B Jose Valentin LAD |
| 26 | 306th | OF Juan Gonzalez Cle |
| 27 | 319th | 1B J.T. Snow SF |
| 28 | 330th | SP Daniel Cabrera Bal |
| 29 | 343rd | RP Joe Borowski TB |