| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Mark Teixeira Tex |
| 2 | 17th | OF Bobby Abreu Phi |
| 3 | 32nd | RP Armando Benitez SF |
| 4 | 41st | C Ivan Rodriguez Det |
| 5 | 56th | 1B Richie Sexson Sea |
| 6 | 65th | 3B Troy Glaus Ari |
| 7 | 80th | RP Dan Kolb Atl |
| 8 | 89th | SP Livan Hernandez Was |
| 9 | 104th | SP C.C. Sabathia Cle |
| 10 | 113th | OF Brad Wilkerson Was |
| 11 | 128th | RP Shingo Takatsu NYN |
| 12 | 137th | SS Juan Uribe ChA |
| 13 | 152nd | SP Zack Greinke KC |
| 14 | 161st | SP Jeremy Bonderman Det |
| 15 | 176th | 2B Chase Utley Phi |
| 16 | 185th | OF Jeremy Reed Sea |
| 17 | 200th | SP Jerome Williams ChN |
| 18 | 209th | 3B D'Angelo Jimenez Cin |
| 19 | 224th | SP Jose Contreras ChA |
| 20 | 233rd | C Miguel Olivo SD |
| 21 | 248th | SP Mike Maroth Det |
| 22 | 257th | SS Angel Berroa KC |
| 23 | 272nd | OF Nick Swisher Oak |
| 24 | 281st | 3B Garrett Atkins Col |
| 25 | 296th | OF Laynce Nix Tex |
| 26 | 305th | SP Jon Garland ChA |
| 27 | 320th | DH Josh Phelps TB |
| 28 | 329th | 2B Chris Burke Hou |
| 29 | 344th | SP Edwin Jackson LAD |