| Round | Overall | Player |
|---|---|---|
| 1 | 6th | C Victor Martinez Cle |
| 2 | 19th | OF Miguel Cabrera Fla |
| 3 | 30th | SS Mike Young Tex |
| 4 | 43rd | SP Roy Oswalt Hou |
| 5 | 54th | 3B Chipper Jones Atl |
| 6 | 67th | SP Carl Pavano NYA |
| 7 | 78th | OF J.D. Drew LAD |
| 8 | 91st | RP Braden Looper NYN |
| 9 | 102nd | 2B Brian Roberts Bal |
| 10 | 115th | OF Shawn Green Ari |
| 11 | 126th | OF Geoff Jenkins Mil |
| 12 | 139th | SP Brad Radke Min |
| 13 | 150th | RP Danys Baez TB |
| 14 | 163rd | SP Ryan Drese Was |
| 15 | 174th | SP John Thomson Atl |
| 16 | 187th | SP Greg Aquino Ari |
| 17 | 198th | 1B Kevin Millar Bos |
| 18 | 211th | SP Rodrigo Lopez Bal |
| 19 | 222nd | SP Orlando Hernandez ChA |
| 20 | 235th | OF Wily Pena Cin |
| 21 | 246th | 2B Tony Womack NYA |
| 22 | 259th | 3B Vinny Castilla Was |
| 23 | 270th | SS Cesar Izturis LAD |
| 24 | 283rd | OF Jose Cruz Jr LAD |
| 25 | 294th | 1B Ken Harvey KC |
| 26 | 307th | C Jason LaRue Cin |
| 27 | 318th | RP Mike DeJean Col |
| 28 | 331st | RP Jose Valverde Ari |
| 29 | 342nd | RP Jesus Colome TB |