| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 3B Adrian Beltre Sea |
| 2 | 13th | RP Mariano Rivera NYA |
| 3 | 36th | C Jorge Posada NYA |
| 4 | 37th | OF Sammy Sosa Bal |
| 5 | 60th | 1B Derrek Lee ChN |
| 6 | 61st | RP Francisco Cordero Tex |
| 7 | 84th | 2B Bret Boone Min |
| 8 | 85th | SP Roger Clemens Hou |
| 9 | 108th | SP Freddy Garcia ChA |
| 10 | 109th | SP Chris Carpenter StL |
| 11 | 132nd | OF Moises Alou SF |
| 12 | 133rd | OF Aaron Rowand ChA |
| 13 | 156th | OF Steve Finley LAA |
| 14 | 157th | SP Brad Penny LAD |
| 15 | 180th | 1B Erubiel Durazo Oak |
| 16 | 181st | SP Doug Davis Mil |
| 17 | 204th | SS Jack Wilson Pit |
| 18 | 205th | OF Craig A. Wilson Pit |
| 19 | 228th | SP Russ Ortiz Ari |
| 20 | 229th | OF Lew Ford Min |
| 21 | 252nd | SP Eric Milton Cin |
| 22 | 253rd | OF Cliff Floyd NYN |
| 23 | 276th | C Rod Barajas Tex |
| 24 | 277th | 1B Tino Martinez NYA |
| 25 | 300th | 3B Ty Wigginton Pit |
| 26 | 301st | 2B Omar Infante Det |
| 27 | 324th | SP Nate Robertson Det |
| 28 | 325th | SS Adam Everett Hou |
| 29 | 348th | RP Tom Gordon NYA |