| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 1B Albert Pujols StL |
| 2 | 24th | OF Gary Sheffield NYA |
| 3 | 25th | 3B Adrian Beltre Sea |
| 4 | 48th | OF Vernon Wells Tor |
| 5 | 49th | SP Roy Oswalt Hou |
| 6 | 72nd | OF Aubrey Huff TB |
| 7 | 73rd | SP Roy Halladay Tor |
| 8 | 96th | SP Rich Harden Oak |
| 9 | 97th | RP Jason Isringhausen StL |
| 10 | 120th | 2B Jose Vidro Was |
| 11 | 121st | DH Mike Sweeney KC |
| 12 | 144th | SS Jose Reyes NYN |
| 13 | 145th | SP Greg Maddux ChN |
| 14 | 168th | C Mike Lieberthal Phi |
| 15 | 169th | OF Geoff Jenkins Mil |
| 16 | 192nd | SP Jarrod Washburn LAA |
| 17 | 193rd | SP Russ Ortiz Ari |
| 18 | 216th | 3B Corey Koskie Tor |
| 19 | 217th | SP Kip Wells Pit |
| 20 | 240th | 1B Nick Johnson Was |
| 21 | 241st | RP Chad Cordero Was |
| 22 | 264th | C John Buck KC |
| 23 | 265th | OF Mike Cameron NYN |
| 24 | 288th | SP Mike Adams Mil |
| 25 | 289th | 2B Placido Polanco Det |
| 26 | 312th | SP Dave Bush Tor |
| 27 | 313th | SS Alex Gonzalez Fla |
| 28 | 336th | SP Ramon Ortiz Cin |
| 29 | 337th | SP Chin-Hui Tsao Col |