| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Vladimir Guerrero LAA |
| 2 | 21st | 3B Eric Chavez Oak |
| 3 | 28th | SS Mike Young Tex |
| 4 | 45th | SP Curt Schilling Bos |
| 5 | 52nd | C Jorge Posada NYA |
| 6 | 69th | SP Carl Pavano NYA |
| 7 | 76th | SP John Smoltz Atl |
| 8 | 93rd | SP Oliver Perez Pit |
| 9 | 100th | OF Johnny Damon Bos |
| 10 | 117th | SP Livan Hernandez Was |
| 11 | 124th | SP Matt Clement Bos |
| 12 | 141st | 1B Sean Casey Cin |
| 13 | 148th | SP Jake Westbrook Cle |
| 14 | 165th | 2B Mark Bellhorn NYA |
| 15 | 172nd | OF Jeromy Burnitz ChN |
| 16 | 189th | SP Rodrigo Lopez Bal |
| 17 | 196th | SP Doug Davis Mil |
| 18 | 213th | OF Kevin Mench Tex |
| 19 | 220th | C Ramon Hernandez SD |
| 20 | 237th | OF Trot Nixon Bos |
| 21 | 244th | SP Scott Kazmir TB |
| 22 | 261st | 1B Kevin Millar Bos |
| 23 | 268th | SP Gavin Floyd Phi |
| 24 | 285th | SP Ryan Drese Was |
| 25 | 292nd | 2B Aaron Miles Col |
| 26 | 309th | SS Cesar Izturis LAD |
| 27 | 316th | 3B Ty Wigginton Pit |
| 28 | 333rd | OF Jacque Jones Min |
| 29 | 340th | SP Mike Maroth Det |