| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Carlos Beltran NYN |
| 2 | 19th | 1B Adam Dunn Cin |
| 3 | 30th | 1B Carlos Delgado Fla |
| 4 | 43rd | 3B Aramis Ramirez ChN |
| 5 | 54th | OF Jim Edmonds StL |
| 6 | 67th | 1B Derrek Lee ChN |
| 7 | 78th | SS Rafael Furcal Atl |
| 8 | 91st | SP Bartolo Colon LAA |
| 9 | 102nd | SP Mike Mussina NYA |
| 10 | 115th | OF Carl Crawford TB |
| 11 | 126th | 2B Aaron Boone Cle |
| 12 | 139th | SP Brian Lawrence SD |
| 13 | 150th | SP Kevin Brown NYA |
| 14 | 163rd | C Jason Kendall Oak |
| 15 | 174th | SP Joel Pineiro Sea |
| 16 | 187th | SP Derek Lowe LAD |
| 17 | 198th | SP Jeff Suppan StL |
| 18 | 211th | RP Jose Mesa Pit |
| 19 | 222nd | RP Shingo Takatsu NYN |
| 20 | 235th | SS Julio Lugo TB |
| 21 | 246th | SP Mike Hampton Atl |
| 22 | 259th | OF Jermaine Dye ChA |
| 23 | 270th | 3B Morgan Ensberg Hou |
| 24 | 283rd | 2B Todd Walker ChN |
| 25 | 294th | OF Juan Pierre Fla |
| 26 | 307th | C Brian Schneider Was |
| 27 | 318th | SP Mark Redman Pit |
| 28 | 331st | OF David DeJesus KC |
| 29 | 342nd | SP Greg Aquino Ari |