| Round | Overall | Player |
|---|---|---|
| 1 | 12th | RP Keith Foulke Bos |
| 2 | 13th | 3B Scott Rolen StL |
| 3 | 36th | 2B Jeff Kent LAD |
| 4 | 37th | 3B Melvin Mora Bal |
| 5 | 60th | 1B Paul Konerko ChA |
| 6 | 61st | SS Carlos Guillen Det |
| 7 | 84th | RP Troy Percival Det |
| 8 | 85th | C Mike Piazza NYN |
| 9 | 108th | SP C.C. Sabathia Cle |
| 10 | 109th | OF Jose Guillen Was |
| 11 | 132nd | OF Larry Walker StL |
| 12 | 133rd | RP Danny Graves NYN |
| 13 | 156th | SP Brad Penny LAD |
| 14 | 157th | SS Juan Uribe ChA |
| 15 | 180th | SP Kris Benson NYN |
| 16 | 181st | OF Cliff Floyd NYN |
| 17 | 204th | 3B Vinny Castilla Was |
| 18 | 205th | SP Jason Marquis StL |
| 19 | 228th | 2B Orlando Hudson Tor |
| 20 | 229th | SP Paul Wilson Cin |
| 21 | 252nd | OF Coco Crisp Cle |
| 22 | 253rd | SP Tony Armas Jr. Was |
| 23 | 276th | SP Daniel Cabrera Bal |
| 24 | 277th | 1B Adam LaRoche Atl |
| 25 | 300th | SP Sidney Ponson Bal |
| 26 | 301st | C Rod Barajas Tex |
| 27 | 324th | OF Randy Winn SF |
| 28 | 325th | C Charles Johnson TB |
| 29 | 348th | SP Zach Day Col |