| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SS Miguel Tejada Bal |
| 2 | 21st | C Victor Martinez Cle |
| 3 | 28th | OF Hideki Matsui NYA |
| 4 | 45th | RP Keith Foulke Bos |
| 5 | 52nd | 3B Chipper Jones Atl |
| 6 | 69th | SP Mike Mussina NYA |
| 7 | 76th | OF J.D. Drew LAD |
| 8 | 93rd | RP Braden Looper NYN |
| 9 | 100th | DH Travis Hafner Cle |
| 10 | 117th | SP Freddy Garcia ChA |
| 11 | 124th | OF Geoff Jenkins Mil |
| 12 | 141st | 2B Brian Roberts Bal |
| 13 | 148th | 1B Phil Nevin Tex |
| 14 | 165th | RP B.J. Ryan Bal |
| 15 | 172nd | SP Ryan Drese Was |
| 16 | 189th | SP Rodrigo Lopez Bal |
| 17 | 196th | SP Russ Ortiz Ari |
| 18 | 213th | SP Jon Lieber Phi |
| 19 | 220th | SP Sidney Ponson Bal |
| 20 | 237th | 1B Carlos Pena Det |
| 21 | 244th | RP Jorge Julio Bal |
| 22 | 261st | OF Wily Pena Cin |
| 23 | 268th | 2B Omar Infante Det |
| 24 | 285th | OF Jose Cruz Jr LAD |
| 25 | 292nd | SS Royce Clayton Ari |
| 26 | 309th | 3B Ty Wigginton Pit |
| 27 | 316th | C Jason LaRue Cin |
| 28 | 333rd | RP Mike DeJean Col |
| 29 | 340th | RP Matt Mantei Bos |