| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Todd Helton Col |
| 2 | 18th | SP Jason Schmidt SF |
| 3 | 31st | OF Jim Edmonds StL |
| 4 | 42nd | SP Mark Prior ChN |
| 5 | 55th | RP Francisco Rodriguez LAA |
| 6 | 66th | SP Jake Peavy SD |
| 7 | 79th | 3B Troy Glaus Ari |
| 8 | 90th | RP Billy Wagner Phi |
| 9 | 103rd | SP Rich Harden Oak |
| 10 | 114th | OF Garret Anderson LAA |
| 11 | 127th | 1B Jason Giambi NYA |
| 12 | 138th | SS Jose Reyes NYN |
| 13 | 151st | SP Jeff Weaver LAD |
| 14 | 162nd | C Jason Kendall Oak |
| 15 | 175th | 2B Kazuo Matsui NYN |
| 16 | 186th | OF Cliff Floyd NYN |
| 17 | 199th | OF Richard Hidalgo Tex |
| 18 | 210th | DH Frank Thomas ChA |
| 19 | 223rd | 1B Erubiel Durazo Oak |
| 20 | 234th | C Michael Barrett ChN |
| 21 | 247th | SP Orlando Hernandez ChA |
| 22 | 258th | SP Horacio Ramirez Atl |
| 23 | 271st | 2B Luis Castillo Fla |
| 24 | 282nd | SP Kip Wells Pit |
| 25 | 295th | 3B Brandon Inge Det |
| 26 | 306th | SP Paul Byrd LAA |
| 27 | 319th | SP Randy Wolf Phi |
| 28 | 330th | OF Kevin Mench Tex |
| 29 | 343rd | SS Adam Everett Hou |