| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Manny Ramirez Bos |
| 2 | 20th | OF Barry Bonds SF |
| 3 | 29th | SS Edgar Renteria Bos |
| 4 | 44th | SP Roy Oswalt Hou |
| 5 | 53rd | OF Sammy Sosa Bal |
| 6 | 68th | SP Josh Beckett Fla |
| 7 | 77th | RP Dan Kolb Atl |
| 8 | 92nd | RP Francisco Cordero Tex |
| 9 | 101st | SP Matt Clement Bos |
| 10 | 116th | SP C.C. Sabathia Cle |
| 11 | 125th | 3B Casey Blake Cle |
| 12 | 140th | SP Jaret Wright NYA |
| 13 | 149th | 1B Kevin Millar Bos |
| 14 | 164th | 2B Ray Durham SF |
| 15 | 173rd | SP Tom Glavine NYN |
| 16 | 188th | OF Austin Kearns Cin |
| 17 | 197th | SP Noah Lowry SF |
| 18 | 212th | OF Juan Pierre Fla |
| 19 | 221st | 1B Rafael Palmeiro Bal |
| 20 | 236th | 1B Ben Broussard Cle |
| 21 | 245th | SS Omar Vizquel SF |
| 22 | 260th | RP Bob Wickman Cle |
| 23 | 269th | 3B D'Angelo Jimenez Cin |
| 24 | 284th | DH Shea Hillenbrand Tor |
| 25 | 293rd | C John Buck KC |
| 26 | 308th | SP Jose Contreras ChA |
| 27 | 317th | C Benito Santiago Pit |
| 28 | 332nd | 2B Orlando Hudson Tor |
| 29 | 341st | OF Coco Crisp Cle |