| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Scott Rolen StL |
| 2 | 14th | 1B Nomar Garciaparra ChN |
| 3 | 35th | C Javy Lopez Bal |
| 4 | 38th | OF Brian S. Giles SD |
| 5 | 59th | OF Aubrey Huff TB |
| 6 | 62nd | 1B Richie Sexson Sea |
| 7 | 83rd | 2B Bret Boone Min |
| 8 | 86th | OF Johnny Damon Bos |
| 9 | 107th | 3B David Wright NYN |
| 10 | 110th | SP Livan Hernandez Was |
| 11 | 131st | SP Kevin Brown NYA |
| 12 | 134th | SP Dontrelle Willis Fla |
| 13 | 155th | SP Brandon Webb Ari |
| 14 | 158th | OF Jason Bay Pit |
| 15 | 179th | SP Derek Lowe LAD |
| 16 | 182nd | SP Kazuhisa Ishii NYN |
| 17 | 203rd | OF Preston Wilson Was |
| 18 | 206th | 2B Chase Utley Phi |
| 19 | 227th | SP Woody Williams SD |
| 20 | 230th | SP Brian Lawrence SD |
| 21 | 251st | SP Scott Kazmir TB |
| 22 | 254th | SP Esteban Loaiza Was |
| 23 | 275th | SS Clint Barmes Col |
| 24 | 278th | SP Jeff Francis Col |
| 25 | 299th | OF Reggie Sanders StL |
| 26 | 302nd | SP Mark Redman Pit |
| 27 | 323rd | 1B J.T. Snow SF |
| 28 | 326th | 3B Edgardo Alfonzo SF |
| 29 | 347th | C Damian Miller Mil |