| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Carlos Beltran NYN |
| 2 | 19th | RP Eric Gagne LAD |
| 3 | 30th | 3B Adrian Beltre Sea |
| 4 | 43rd | SS Mike Young Tex |
| 5 | 54th | SP Carlos Zambrano ChN |
| 6 | 67th | SP Carl Pavano NYA |
| 7 | 78th | 1B Paul Konerko ChA |
| 8 | 91st | RP Jose Mesa Pit |
| 9 | 102nd | OF Jeromy Burnitz ChN |
| 10 | 115th | SP Jake Westbrook Cle |
| 11 | 126th | C Joe Mauer Min |
| 12 | 139th | SP Matt Morris StL |
| 13 | 150th | 2B Mark Loretta SD |
| 14 | 163rd | OF Aaron Rowand ChA |
| 15 | 174th | OF Corey Patterson ChN |
| 16 | 187th | SP Jason Marquis StL |
| 17 | 198th | 1B Lyle Overbay Mil |
| 18 | 211th | OF Eric Byrnes Bal |
| 19 | 222nd | SS Khalil Greene SD |
| 20 | 235th | SP Zach Day Col |
| 21 | 246th | 2B Tony Womack NYA |
| 22 | 259th | 3B Dallas McPherson LAA |
| 23 | 270th | 3B Vinny Castilla Was |
| 24 | 283rd | 1B Scott Hatteberg Oak |
| 25 | 294th | C Miguel Olivo SD |
| 26 | 307th | SP Carlos Silva Min |
| 27 | 318th | SP Jerome Williams ChN |
| 28 | 331st | SP John Lackey LAA |
| 29 | 342nd | OF Raul Mondesi Atl |