| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SP Randy Johnson NYA |
| 2 | 13th | OF Bobby Abreu Phi |
| 3 | 36th | 3B Aramis Ramirez ChN |
| 4 | 37th | 1B Adam Dunn Cin |
| 5 | 60th | 1B Sean Casey Cin |
| 6 | 61st | SP John Smoltz Atl |
| 7 | 84th | RP Octavio Dotel Oak |
| 8 | 85th | 2B Marcus Giles Atl |
| 9 | 108th | C Paul Lo Duca Fla |
| 10 | 109th | SP Barry Zito Oak |
| 11 | 132nd | OF Shawn Green Ari |
| 12 | 133rd | SS Orlando Cabrera LAA |
| 13 | 156th | 1B Dmitri Young Det |
| 14 | 157th | RP Joe Borowski TB |
| 15 | 180th | SP Adam Eaton SD |
| 16 | 181st | SP Kelvim Escobar LAA |
| 17 | 204th | SP John Thomson Atl |
| 18 | 205th | SP Ted Lilly Tor |
| 19 | 228th | 1B Ryan Klesko SD |
| 20 | 229th | DH Matthew LeCroy Min |
| 21 | 252nd | 1B Hee Seop Choi LAD |
| 22 | 253rd | SP Cliff Lee Cle |
| 23 | 276th | 3B Michael Cuddyer Min |
| 24 | 277th | RP Shingo Takatsu NYN |
| 25 | 300th | 1B Jay Gibbons Bal |
| 26 | 301st | 2B Placido Polanco Det |
| 27 | 324th | 3B Morgan Ensberg Hou |
| 28 | 325th | SP Mike Maroth Det |
| 29 | 348th | SS Felipe Lopez Cin |