| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 1B Albert Pujols StL |
| 2 | 24th | 3B Eric Chavez Oak |
| 3 | 25th | RP Eric Gagne LAD |
| 4 | 48th | C Ivan Rodriguez Det |
| 5 | 49th | OF Brian S. Giles SD |
| 6 | 72nd | 2B Marcus Giles Atl |
| 7 | 73rd | RP Francisco Cordero Tex |
| 8 | 96th | SP Kerry Wood ChN |
| 9 | 97th | OF Garret Anderson LAA |
| 10 | 120th | 1B Lance Berkman Hou |
| 11 | 121st | SP Dontrelle Willis Fla |
| 12 | 144th | OF Luis Gonzalez Ari |
| 13 | 145th | SP Greg Maddux ChN |
| 14 | 168th | 2B Mark Bellhorn NYA |
| 15 | 169th | RP Danny Graves NYN |
| 16 | 192nd | SS Jack Wilson Pit |
| 17 | 193rd | SP Tom Glavine NYN |
| 18 | 216th | SP Jeff Suppan StL |
| 19 | 217th | OF Eric Byrnes Bal |
| 20 | 240th | 1B Kevin Millar Bos |
| 21 | 241st | OF Jose Cruz Jr LAD |
| 22 | 264th | 3B Sean Burroughs SD |
| 23 | 265th | SP Jarrod Washburn LAA |
| 24 | 288th | SP Wade Miller Bos |
| 25 | 289th | 3B Edgardo Alfonzo SF |
| 26 | 312th | SS Adam Everett Hou |
| 27 | 313th | C Brian Schneider Was |
| 28 | 336th | SP Orlando Hernandez ChA |
| 29 | 337th | OF Jason Lane Hou |