| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 2B Bret Boone Min |
| 2 | 18th | SP Jason Schmidt SF |
| 3 | 31st | SS Mike Young Tex |
| 4 | 42nd | RP Mariano Rivera NYA |
| 5 | 55th | RP Billy Wagner Phi |
| 6 | 66th | 3B Mike Lowell Fla |
| 7 | 79th | 1B Sean Casey Cin |
| 8 | 90th | SP Carl Pavano NYA |
| 9 | 103rd | SP Livan Hernandez Was |
| 10 | 114th | C Jason Kendall Oak |
| 11 | 127th | OF Pat Burrell Phi |
| 12 | 138th | OF Geoff Jenkins Mil |
| 13 | 151st | SP Joel Pineiro Sea |
| 14 | 162nd | OF Milton Bradley LAD |
| 15 | 175th | SP David Wells Bos |
| 16 | 186th | OF Matt Lawton NYA |
| 17 | 199th | SS Cesar Izturis LAD |
| 18 | 210th | OF Shannon Stewart Min |
| 19 | 223rd | SP Brad Penny LAD |
| 20 | 234th | 1B Nick Johnson Was |
| 21 | 247th | OF Lew Ford Min |
| 22 | 258th | 3B D'Angelo Jimenez Cin |
| 23 | 271st | SP Dewon Brazelton TB |
| 24 | 282nd | 2B Orlando Hudson Tor |
| 25 | 295th | C J.D. Closser Col |
| 26 | 306th | SP Joe Kennedy Oak |
| 27 | 319th | OF Wily Pena Cin |
| 28 | 330th | SP Josh Fogg Pit |
| 29 | 343rd | 1B Hee Seop Choi LAD |