| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 3B Alex Rodriguez NYA |
| 2 | 23rd | 1B Nomar Garciaparra ChN |
| 3 | 26th | SP Tim Hudson Atl |
| 4 | 47th | 1B Richie Sexson Sea |
| 5 | 50th | SP Roy Halladay Tor |
| 6 | 71st | SP Rich Harden Oak |
| 7 | 74th | 2B Jeff Kent LAD |
| 8 | 95th | OF Jason Bay Pit |
| 9 | 98th | SP Bartolo Colon LAA |
| 10 | 119th | SP Mark Buehrle ChA |
| 11 | 122nd | OF Preston Wilson Was |
| 12 | 143rd | SP Brandon Webb Ari |
| 13 | 146th | OF Larry Walker StL |
| 14 | 167th | SP Matt Morris StL |
| 15 | 170th | OF Jacque Jones Min |
| 16 | 191st | C A.J. Pierzynski ChA |
| 17 | 194th | OF Trot Nixon Bos |
| 18 | 215th | 1B Carlos Pena Det |
| 19 | 218th | 1B Rafael Palmeiro Bal |
| 20 | 239th | 2B Luis Castillo Fla |
| 21 | 242nd | 3B Joe Crede ChA |
| 22 | 263rd | SP Randy Wolf Phi |
| 23 | 266th | SP Cliff Lee Cle |
| 24 | 287th | SP Nate Robertson Det |
| 25 | 290th | SP Darrell May NYA |
| 26 | 311th | SP Jose Contreras ChA |
| 27 | 314th | OF Coco Crisp Cle |
| 28 | 335th | SS Julio Lugo TB |
| 29 | 338th | C Damian Miller Mil |