| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Alfonso Soriano Tex |
| 2 | 20th | OF Miguel Cabrera Fla |
| 3 | 29th | OF Ichiro Suzuki Sea |
| 4 | 44th | 3B Troy Glaus Ari |
| 5 | 53rd | 3B Chipper Jones Atl |
| 6 | 68th | OF Shawn Green Ari |
| 7 | 77th | RP Joe Nathan Min |
| 8 | 92nd | RP Dan Kolb Atl |
| 9 | 101st | 1B Jeff Bagwell Hou |
| 10 | 116th | OF Scott Podsednik ChA |
| 11 | 125th | SS Bobby Crosby Oak |
| 12 | 140th | SP Jake Westbrook Cle |
| 13 | 149th | C Johnny Estrada Atl |
| 14 | 164th | RP Braden Looper NYN |
| 15 | 173rd | SP Brian Lawrence SD |
| 16 | 188th | SP Rodrigo Lopez Bal |
| 17 | 197th | 1B Lyle Overbay Mil |
| 18 | 212th | SP Russ Ortiz Ari |
| 19 | 221st | OF Bernie Williams NYA |
| 20 | 236th | RP Troy Percival Det |
| 21 | 245th | SP Kenny Rogers Tex |
| 22 | 260th | SS Alex Gonzalez Fla |
| 23 | 269th | 2B Todd Walker ChN |
| 24 | 284th | SP Jason Johnson Det |
| 25 | 293rd | SP Paul Wilson Cin |
| 26 | 308th | C Toby Hall TB |
| 27 | 317th | 3B Michael Cuddyer Min |
| 28 | 332nd | SP Carlos Silva Min |
| 29 | 341st | SP Jose Lima KC |