| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Manny Ramirez Bos |
| 2 | 14th | SP Randy Johnson NYA |
| 3 | 35th | 3B Aramis Ramirez ChN |
| 4 | 38th | SP Roy Oswalt Hou |
| 5 | 59th | SS Edgar Renteria Bos |
| 6 | 62nd | 1B Derrek Lee ChN |
| 7 | 83rd | 2B Kazuo Matsui NYN |
| 8 | 86th | OF J.D. Drew LAD |
| 9 | 107th | SP Matt Clement Bos |
| 10 | 110th | SP Javier Vazquez Ari |
| 11 | 131st | C Mike Piazza NYN |
| 12 | 134th | OF Torii Hunter Min |
| 13 | 155th | SP Jeff Weaver LAD |
| 14 | 158th | OF Jermaine Dye ChA |
| 15 | 179th | 3B Corey Koskie Tor |
| 16 | 182nd | SP Brett Tomko SF |
| 17 | 203rd | SP Jamie Moyer Sea |
| 18 | 206th | OF Reggie Sanders StL |
| 19 | 227th | SP Mike Hampton Atl |
| 20 | 230th | SS David Eckstein StL |
| 21 | 251st | OF Randy Winn SF |
| 22 | 254th | OF Craig Biggio Hou |
| 23 | 275th | OF Darin Erstad LAA |
| 24 | 278th | 1B Jason Phillips LAD |
| 25 | 299th | OF Marlon Byrd Was |
| 26 | 302nd | 1B Adam LaRoche Atl |
| 27 | 323rd | SP Cory Lidle Phi |
| 28 | 326th | 2B Ron Belliard Cle |
| 29 | 347th | RP B.J. Ryan Bal |