| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Vladimir Guerrero LAA |
| 2 | 22nd | OF Jim Edmonds StL |
| 3 | 27th | SP Carlos Zambrano ChN |
| 4 | 46th | C Victor Martinez Cle |
| 5 | 51st | SP Curt Schilling Bos |
| 6 | 70th | SP Mark Mulder StL |
| 7 | 75th | 1B Paul Konerko ChA |
| 8 | 94th | 1B Justin Morneau Min |
| 9 | 99th | RP Trevor Hoffman SD |
| 10 | 118th | 3B Casey Blake Cle |
| 11 | 123rd | RP Jose Mesa Pit |
| 12 | 142nd | OF Barry Bonds SF |
| 13 | 147th | SS Juan Uribe ChA |
| 14 | 166th | SP Jason Marquis StL |
| 15 | 171st | OF Ken Griffey Jr Cin |
| 16 | 190th | OF Jeromy Burnitz ChN |
| 17 | 195th | 2B Junior Spivey Was |
| 18 | 214th | SP Doug Davis Mil |
| 19 | 219th | 3B Dallas McPherson LAA |
| 20 | 238th | 2B Tony Womack NYA |
| 21 | 243rd | SP Zach Day Col |
| 22 | 262nd | SS Jose Reyes NYN |
| 23 | 267th | 1B J.T. Snow SF |
| 24 | 286th | C Miguel Olivo SD |
| 25 | 291st | 1B Ryan Klesko SD |
| 26 | 310th | SP Mike Maroth Det |
| 27 | 315th | SP Kazuhisa Ishii NYN |
| 28 | 334th | SP Mark Redman Pit |
| 29 | 339th | RP LaTroy Hawkins SF |