| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Carlos Delgado Fla |
| 2 | 13th | DH Jim Thome ChA |
| 3 | 36th | 1B Adam Dunn Cin |
| 4 | 37th | RP Brad Lidge Hou |
| 5 | 60th | OF Vernon Wells Tor |
| 6 | 61st | RP Armando Benitez SF |
| 7 | 84th | SS Rafael Furcal Atl |
| 8 | 85th | SP Freddy Garcia ChA |
| 9 | 108th | SP C.C. Sabathia Cle |
| 10 | 109th | 3B David Wright NYN |
| 11 | 132nd | C Joe Mauer Min |
| 12 | 133rd | OF Moises Alou SF |
| 13 | 156th | SP Kip Wells Pit |
| 14 | 157th | SP Horacio Ramirez Atl |
| 15 | 180th | SP Andy Pettitte Hou |
| 16 | 181st | SP Kevin Millwood Cle |
| 17 | 204th | SP Kris Benson NYN |
| 18 | 205th | SP Ryan Drese Was |
| 19 | 228th | 2B Chase Utley Phi |
| 20 | 229th | DH Frank Thomas ChA |
| 21 | 252nd | 2B Aaron Boone Cle |
| 22 | 253rd | 3B Jose Valentin LAD |
| 23 | 276th | OF Raul Ibanez Sea |
| 24 | 277th | SP Esteban Loaiza Was |
| 25 | 300th | 1B Jay Gibbons Bal |
| 26 | 301st | SS Cristian Guzman Was |
| 27 | 324th | SP Gil Meche Sea |
| 28 | 325th | C Jason LaRue Cin |
| 29 | 348th | OF Jeremy Reed Sea |