| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Vladimir Guerrero LAA |
| 2 | 21st | SP Jake Peavy SD |
| 3 | 28th | 1B Carlos Delgado NYN |
| 4 | 45th | 3B Hank Blalock Tex |
| 5 | 52nd | RP Huston Street Oak |
| 6 | 69th | SP Dontrelle Willis Fla |
| 7 | 76th | 3B Chipper Jones Atl |
| 8 | 93rd | OF Jeff Francoeur Atl |
| 9 | 100th | C Jorge Posada NYA |
| 10 | 117th | SP Zach Duke Pit |
| 11 | 124th | 2B Mark Loretta Bos |
| 12 | 141st | SS Edgar Renteria Atl |
| 13 | 148th | SP Chris Young SD |
| 14 | 165th | OF Austin Kearns Was |
| 15 | 172nd | SP Brad Penny LAD |
| 16 | 189th | SP Erik Bedard Bal |
| 17 | 196th | OF Ryan Freel Cin |
| 18 | 213th | OF Moises Alou SF |
| 19 | 220th | C Brian McCann Atl |
| 20 | 237th | SP Jorge Sosa StL |
| 21 | 244th | OF Chris Duffy Pit |
| 22 | 261st | SP Kris Benson Bal |
| 23 | 268th | OF Rocco Baldelli TB |
| 24 | 285th | 1B Casey Kotchman LAA |
| 25 | 292nd | SP Jerome Williams ChN |
| 26 | 309th | OF Corey Patterson Bal |
| 27 | 316th | OF Delmon Young TB |
| 28 | 333rd | SP Zack Greinke KC |
| 29 | 340th | RP Chad Orvella TB |