| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B David Ortiz Bos |
| 2 | 20th | 3B David Wright NYN |
| 3 | 29th | OF Andruw Jones Atl |
| 4 | 44th | SP Carlos Zambrano ChN |
| 5 | 53rd | C Joe Mauer Min |
| 6 | 68th | OF Jim Edmonds StL |
| 7 | 77th | 2B Rickie Weeks Mil |
| 8 | 92nd | RP B.J. Ryan Tor |
| 9 | 101st | SS Bobby Crosby Oak |
| 10 | 116th | SP Javier Vazquez ChA |
| 11 | 125th | SP C.C. Sabathia Cle |
| 12 | 140th | OF Wily Pena Bos |
| 13 | 149th | SP Doug Davis Ari |
| 14 | 164th | 3B Edwin Encarnacion Cin |
| 15 | 173rd | RP Chris Ray Bal |
| 16 | 188th | OF Josh Willingham Fla |
| 17 | 197th | SP Tim Wakefield Bos |
| 18 | 212th | OF Milton Bradley Oak |
| 19 | 221st | 1B Dan Johnson Oak |
| 20 | 236th | RP Chris Reitsma Atl |
| 21 | 245th | SS Russ Adams Tor |
| 22 | 260th | SP Rodrigo Lopez Col |
| 23 | 269th | OF Jeremy Reed Sea |
| 24 | 284th | 2B Ian Kinsler Tex |
| 25 | 293rd | 1B Phil Nevin Min |
| 26 | 308th | OF Jason Michaels Cle |
| 27 | 317th | SP Jason Johnson Bos |
| 28 | 332nd | DH Dmitri Young Det |
| 29 | 341st | SP Jeff Francis Col |