| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Miguel Cabrera Fla |
| 2 | 14th | 1B Derrek Lee ChN |
| 3 | 35th | SP Roy Halladay Tor |
| 4 | 38th | OF Alfonso Soriano ChA |
| 5 | 59th | RP Joe Nathan Min |
| 6 | 62nd | SP Felix Hernandez Sea |
| 7 | 83rd | OF Johnny Damon NYA |
| 8 | 86th | SP Tim Hudson Atl |
| 9 | 107th | SS Clint Barmes Col |
| 10 | 110th | RP Bobby Jenks ChA |
| 11 | 131st | OF Torii Hunter Min |
| 12 | 134th | 2B Brian Roberts Bal |
| 13 | 155th | SP Jon Garland ChA |
| 14 | 158th | OF Randy Winn SF |
| 15 | 179th | C Ramon Hernandez Bal |
| 16 | 182nd | DH Mike Sweeney KC |
| 17 | 203rd | SP Brad Radke Min |
| 18 | 206th | 3B Mike Lowell Bos |
| 19 | 227th | OF Jose Guillen Was |
| 20 | 230th | SS Khalil Greene SD |
| 21 | 251st | SP Shawn Chacon Pit |
| 22 | 254th | C Paul Lo Duca NYN |
| 23 | 275th | SP Carl Pavano NYA |
| 24 | 278th | RP Joe Borowski Cle |
| 25 | 299th | OF Jacque Jones ChN |
| 26 | 302nd | 2B Junior Spivey StL |
| 27 | 323rd | SP Vicente Padilla Tex |
| 28 | 326th | 3B Brandon Inge Det |
| 29 | 347th | SP Craig Hansen Bos |