| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SP Pedro Martinez NYN |
| 2 | 13th | OF Bobby Abreu NYA |
| 3 | 36th | OF Ichiro Suzuki Sea |
| 4 | 37th | SP Randy Johnson NYA |
| 5 | 60th | SS Jose Reyes NYN |
| 6 | 61st | SP Andy Pettitte Hou |
| 7 | 84th | C Ivan Rodriguez Det |
| 8 | 85th | 3B Melvin Mora Bal |
| 9 | 108th | 3B Chad Tracy Ari |
| 10 | 109th | 2B Luis Castillo Min |
| 11 | 132nd | 1B Prince Fielder Mil |
| 12 | 133rd | SP Dan Haren Oak |
| 13 | 156th | SP Francisco Liriano Min |
| 14 | 157th | RP Keith Foulke Cle |
| 15 | 180th | 1B Lyle Overbay Tor |
| 16 | 181st | OF Willy Taveras Hou |
| 17 | 204th | SP Greg Maddux SD |
| 18 | 205th | C Jason Kendall Oak |
| 19 | 228th | RP Scott Baker Min |
| 20 | 229th | 2B Luis A. Gonzalez Col |
| 21 | 252nd | SS Orlando Cabrera LAA |
| 22 | 253rd | OF Reggie Sanders KC |
| 23 | 276th | SP Justin Verlander Det |
| 24 | 277th | SP Ryan Madson Phi |
| 25 | 300th | SP Dave Bush Mil |
| 26 | 301st | SP Anthony Reyes StL |
| 27 | 324th | OF David DeJesus KC |
| 28 | 325th | OF Brian N. Anderson ChA |
| 29 | 348th | SP Bronson Arroyo Cin |