| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Jason Bay Pit |
| 2 | 15th | OF Bobby Abreu NYA |
| 3 | 34th | 2B Jeff Kent LAD |
| 4 | 39th | 1B Richie Sexson Sea |
| 5 | 58th | SS Rafael Furcal LAD |
| 6 | 63rd | SP Mark Buehrle ChA |
| 7 | 82nd | SP Mark Mulder StL |
| 8 | 87th | SP Tim Hudson Atl |
| 9 | 106th | OF Matt Holliday Col |
| 10 | 111th | 3B Melvin Mora Bal |
| 11 | 130th | SP A.J. Burnett Tor |
| 12 | 135th | 1B Prince Fielder Mil |
| 13 | 154th | RP Brian Fuentes Col |
| 14 | 159th | SP Roger Clemens Hou |
| 15 | 178th | RP Mike Gonzalez Atl |
| 16 | 183rd | OF Luis Gonzalez Ari |
| 17 | 202nd | SP Jason Marquis ChA |
| 18 | 207th | OF Aaron Rowand Phi |
| 19 | 226th | SP Jeff Suppan Mil |
| 20 | 231st | C A.J. Pierzynski ChA |
| 21 | 250th | SS J.J. Hardy Mil |
| 22 | 255th | 2B Ray Durham SF |
| 23 | 274th | SP Sidney Ponson Min |
| 24 | 279th | 3B Tony Batista Min |
| 25 | 298th | OF Mike Cameron SD |
| 26 | 303rd | SP Brandon Claussen Cin |
| 27 | 322nd | SS Stephen Drew Ari |
| 28 | 327th | SP Cory Lidle NYA |