| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B David Ortiz Bos |
| 2 | 17th | SP Johan Santana Min |
| 3 | 32nd | 3B Hank Blalock Tex |
| 4 | 41st | 2B Marcus Giles Atl |
| 5 | 56th | C Joe Mauer Min |
| 6 | 65th | SS Bobby Crosby Oak |
| 7 | 80th | OF Jim Edmonds StL |
| 8 | 89th | OF Brad Wilkerson Tex |
| 9 | 104th | OF J.D. Drew LAD |
| 10 | 113th | SP Javier Vazquez ChA |
| 11 | 128th | SP Derek Lowe LAD |
| 12 | 137th | RP Tom Gordon Phi |
| 13 | 152nd | RP Chris Ray Bal |
| 14 | 161st | SP Brad Penny LAD |
| 15 | 176th | SP Jake Westbrook Cle |
| 16 | 185th | SP Chris Capuano Mil |
| 17 | 200th | RP Chad Orvella TB |
| 18 | 209th | SP Aaron Harang Cin |
| 19 | 224th | SP Paul Byrd Cle |
| 20 | 233rd | SS Khalil Greene SD |
| 21 | 248th | SP Chien-Ming Wang NYA |
| 22 | 257th | OF Jose Cruz Jr LAD |
| 23 | 272nd | OF Jeromy Burnitz Pit |
| 24 | 281st | 3B Joe Crede ChA |
| 25 | 296th | 2B Todd Walker SD |
| 26 | 305th | C Mike Lieberthal Phi |
| 27 | 320th | DH Dmitri Young Det |
| 28 | 329th | SP Jason Vargas Fla |