| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Chase Utley Phi |
| 2 | 13th | 3B David Wright NYN |
| 3 | 36th | 1B Paul Konerko ChA |
| 4 | 37th | OF Hideki Matsui NYA |
| 5 | 60th | 2B Felipe Lopez Was |
| 6 | 61st | OF Pat Burrell Phi |
| 7 | 84th | RP Francisco Cordero Mil |
| 8 | 85th | RP Eric Gagne LAD |
| 9 | 108th | C Jorge Posada NYA |
| 10 | 109th | SP Livan Hernandez Ari |
| 11 | 132nd | OF Austin Kearns Was |
| 12 | 133rd | RP Derrick Turnbow Mil |
| 13 | 156th | SP Doug Davis Ari |
| 14 | 157th | OF Garret Anderson LAA |
| 15 | 180th | SP Matt Clement Bos |
| 16 | 181st | SP Oliver Perez Pit |
| 17 | 204th | OF Jose Guillen Was |
| 18 | 205th | OF Milton Bradley Oak |
| 19 | 228th | SP Greg Maddux SD |
| 20 | 229th | SP Brad Radke Min |
| 21 | 252nd | C Jason Kendall Oak |
| 22 | 253rd | 1B Casey Kotchman LAA |
| 23 | 276th | SP David Wells SD |
| 24 | 277th | SS Omar Vizquel SF |
| 25 | 300th | 2B Mark Grudzielanek KC |
| 26 | 301st | 3B Joe Randa Pit |
| 27 | 324th | OF Juan Encarnacion StL |
| 28 | 325th | SP Adam Eaton Phi |